Research Achievements-BGI Group Official Website

2020

BGI had first or corresponding authorship(s) in 12 papers published in CNNS journals in 2020 (updated on July 30, 2020)

12.Chen, Haitao, et al.

Allele-Aware Chromosome-Level Genome Assembly and Efficient Transgene-Free Genome Editing for the Autotetraploid Cultivated Alfalfa
Nature Communications 11.1 (2020): 2494.

11.Goveia, Jermaine, et al.

An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates
Cancer Cell 37.1 (2020): 21-36. e13.

10.Kalucka, Joanna, et al.

Single-Cell Transcriptome Atlas of Murine Endothelial Cells
Cell 180.4 (2020): 764-79. e20.

9.Li, Linzhou, et al.

The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum within Green Plants
Nature Ecology & Evolution (2020).

8.Liu, Zhigang, et al.

Gut Microbiota Mediates Intermittent-Fasting Alleviation of Diabetes-Induced Cognitive Impairment
Nature Communications 11.1 (2020): 855.

7.Rohlenova, Katerina, et al.

Single-Cell Rna Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis
Cell Metabolism 31.4 (2020): 862-77. e14.

6.Shao, Yong, et al.

Genome and Single-Cell Rna-Sequencing of the Earthworm Eisenia Andrei Identifies Cellular Mechanisms Underlying Regeneration
Nature communications 11.1 (2020): 1-15.

5.Tang, Chong, et al.

M6a-Dependent Biogenesis of Circular Rnas in Male Germ Cells
Cell Research 30.3 (2020): 211-28.

4.You, Minsheng, et al.

Variation among 532 Genomes Unveils the Origin and Evolutionary History of a Global Insect Herbivore
Nature Communications 11.1 (2020): 2321.

3.Zhang, Jian, et al.

The Hornwort Genome and Early Land Plant Evolution
Nature Plants 6.2 (2020): 107-18.

2.Zhao, Jing, et al.

Reply To: Transformation of Naked Mole-Rat Cells
Nature 583.7814 (2020): E8-E13.

1.Zhu, Feng, et al.

Metagenome-Wide Association of Gut Microbiome features for Schizophrenia
Nature Communications 11.1 (2020): 1612.

2019

BGI had first or corresponding authorship(s) in 18 papers published in CNNS journals in 2019 (updated on July 30, 2020)

18.Chen, Jinhui, et al.

Liriodendron Genome Sheds Light on Angiosperm Phylogeny and Species–Pair Differentiation.
Nature plants 5.1 (2019): 18-25.

17.Hong, Shaodong, et al.

The Genomic Landscape of Epstein-Barr Virus-Associated Pulmonary Lymphoepithelioma-Like Carcinoma.
Nature communications 10.1 (2019): 1-12.

16.Initiative, One Thousand Plant Transcriptomes.

One Thousand Plant Transcriptomes and the Phylogenomics of Green Plants.
Nature 574.7780 (2019): 679.

15.Jaeger, M, et al.

A Systems Genomics Approach Identifies Siglec15 as a Susceptibility Factor in Recurrent Vulvovaginal Candidiasis.
Science translational medicine 11.496 (2019): eaar3558.

14.Leng, Lizhi, et al.

Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development.
Cell stem cell 25.5 (2019): 697-712. e6.

13.Li, Miaomiao, et al.

Genome Structure and Evolution of Antirrhinum Majus L.
Nature Plants 5.2 (2019): 174-83.

12.Liu, Longqi, et al.

An Integrated Chromatin Accessibility and Transcriptome Landscape of Human Pre-Implantation Embryos.
Nature communications 10.1 (2019): 1-11.

11.Liu, Longqi, et al.

Deconvolution of Single-Cell Multi-Omics Layers Reveals Regulatory Heterogeneity.
Nature communications 10.1 (2019): 1-10.

10.Liu, Yang, et al.

Resolution of the Ordinal Phylogeny of Mosses Using Targeted Exons from Organellar and Nuclear Genomes.
Nature Communications 10.1 (2019): 1-11.

9.Niu, Yuyu, et al.

Dissecting Primate Early Post-Implantation Development Using Long-Term in Vitro Embryo Culture.
Science 366.6467 (2019).

8.Varshney, Rajeev K, et al.

Resequencing of 429 Chickpea Accessions from 45 Countries Provides Insights into Genome Diversity, Domestication and Agronomic Traits.
Nature genetics 51.5 (2019): 857-64.

7.Wang, Jun, et al.

Brain Endothelial Cells Maintain Lactate Homeostasis and Control Adult Hippocampal Neurogenesis.
Cell stem cell 25.6 (2019): 754-67. e9.

6.Wang, Sibo, et al.

Genomes of Early-Diverging Streptophyte Algae Shed Light on Plant Terrestrialization.
Nature Plants (2019): 1-12.

5.Yang, Ning, et al.

Genome Assembly of a Tropical Maize Inbred Line Provides Insights into Structural Variation and Crop Improvement.
Nature genetics 51.6 (2019): 1052-59.

4.Zhang, Li, et al.

Rapid Evolution of Protein Diversity by De Novo Origination in Oryza.
Nature Ecology & Evolution 3.4 (2019): 679-90.

3.Zhao, Yun-Peng, et al.

Resequencing 545 Ginkgo Genomes across the World Reveals the Evolutionary History of the Living Fossil.
Nature communications 10.1 (2019): 1-10.

2.Zhou, Bing, et al.

Grid-Seq for Comprehensive Analysis of Global Rna–Chromatin Interactions.
Nature protocols 14.7 (2019): 2036.

1.Zou, Yuanqiang, et al.

1,520 Reference Genomes from Cultivated Human Gut Bacteria Enable Functional Microbiome Analyses.
Nature biotechnology 37.2 (2019): 179-85.

2018

BGI had first or corresponding authorship(s) in 12 papers published in CNNS journals in 2018 (updated on July 30, 2020)

12.Griesmann, Maximilian, et al.

Phylogenomics Reveals Multiple Losses of Nitrogen-Fixing Root Nodule Symbiosis.
Science 361.6398 (2018): eaat1743.

11.Kukekova, Anna V., et al.

Red Fox Genome Assembly Identifies Genomic Regions Associated with Tame and Aggressive Behaviours.
Nature Ecology & Evolution 2.9 (2018): 1479-91.

10.Liu, Siyang, et al.

Genomic Analyses from Non-Invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History.
Cell 175.2 (2018): 347-59. e14.

9.Mendoza, M Lisandra Zepeda, et al.

Hologenomic Adaptations Underlying the Evolution of Sanguivory in the Common Vampire Bat.
Nature ecology & evolution 2.4 (2018): 659-68.

8.Qiu, Bitao, et al.

Towards Reconstructing the Ancestral Brain Gene-Network Regulating Caste Differentiation in Ants.
Nature ecology & evolution 2.11 (2018): 1782-91.

7.Wang, Feng, et al.

The Genomic Landscape of Small Cell Carcinoma of the Esophagus.
Cell Research 28.7 (2018): 771-74.

6.Wang, Lian, et al.

Autophagy Mediates Glucose Starvation-Induced Glioblastoma Cell Quiescence and Chemoresistance through Coordinating Cell Metabolism, Cell Cycle, and Survival.
Cell death & disease 9.2 (2018): 1-17.

5.Wang, Wensheng, et al.

Genomic Variation in 3,010 Diverse Accessions of Asian Cultivated Rice.
Nature 557.7703 (2018): 43-49.

4.Xu, Jin, et al.

The Structure and Function of the Global Citrus Rhizosphere Microbiome.
Nature communications 9.1 (2018): 1-10.

3.Yang, Jin-Kui, et al.

From Hyper-to Hypoinsulinemia and Diabetes: Effect of Kcnh6 on Insulin Secretion.
Cell Reports 25.13 (2018): 3800-10. e6.

2.Zhang, Qixiang, et al.

The Genetic Architecture of Floral Traits in the Woody Plant Prunus Mume.
Nature communications 9.1 (2018): 1-12.

1.Zhou, Xuming, et al.

Population Genomics of Finless Porpoises Reveal an Incipient Cetacean Species Adapted to Freshwater.
Nature Communications 9.1 (2018): 1276.

2017

BGI had first or corresponding authorship(s) in 14 papers published in CNNS journals in 2017 (updated on July 30, 2020)

14.Avalos, Arian, et al.

A Soft Selective Sweep During Rapid Evolution of Gentle Behaviour in an Africanized Honeybee.
Nature communications 8.1 (2017): 1-9.

13.Chen, Chen, et al.

The Microbiota Continuum Along the Female Reproductive Tract and Its Relation to Uterine-Related Diseases.
Nature Communications 8.1 (2017): 875.

12.Cheng, Tingcai, et al.

Genomic Adaptation to Polyphagy and Insecticides in a Major East Asian Noctuid Pest.
Nature ecology & evolution 1.11 (2017): 1747-56.

11.Fukushima, Kenji, et al.

Genome of the Pitcher Plant Cephalotus Reveals Genetic Changes Associated with Carnivory.
Nature Ecology & Evolution 1.3 (2017): 1-9.

10.Gu, Yanyun, et al.

Analyses of Gut Microbiota and Plasma Bile Acids Enable Stratification of Patients for Antidiabetic Treatment.
Nature Communications 8.1 (2017): 1785.

9.Harkess, Alex, et al.

The Asparagus Genome Sheds Light on the Origin and Evolution of a Young Y Chromosome.
Nature Communications 8.1 (2017): 1279.

8.Jie, Zhuye, et al.

The Gut Microbiome in Atherosclerotic Cardiovascular Disease.
Nature communications 8.1 (2017): 1-12.

7.Liu, Ruixin, et al.

Gut Microbiome and Serum Metabolome Alterations in Obesity and after Weight-Loss Intervention.
Nature medicine 23.7 (2017): 859.

6.Maretty, Lasse, et al.

Sequencing and De Novo Assembly of 150 Genomes from Denmark as a Population Reference.
Nature 548.7665 (2017): 87-91.

5.Reyes-Chin-Wo, Sebastian, et al.

Genome Assembly with in Vitro Proximity Ligation Data and Whole-Genome Triplication in Lettuce.
Nature Communications 8.1 (2017): 14953.

4.Seki, Ryohei, et al.

Functional Roles of Aves Class-Specific Cis-Regulatory Elements on Macroevolution of Bird-Specific Features.
Nature Communications 8.1 (2017): 14229.

3.Shao, Changwei, et al.

The Genome and Transcriptome of Japanese Flounder Provide Insights into Flatfish Asymmetry.
Nature genetics 49.1 (2017): 119-24.

2.Shen, Yue, et al.

Deep Functional Analysis of Synii, a 770-Kilobase Synthetic Yeast Chromosome.
Science 355.6329 (2017).

1.Varshney, Rajeev K, et al.

Pearl Millet Genome Sequence Provides a Resource to Improve Agronomic Traits in Arid Environments.
Nature biotechnology 35.10 (2017): 969-76.

2016

BGI had first or corresponding authorship(s) in 14 papers published in CNNS journals in 2016 (updated on July 30, 2020)

14.Bertioli, David John, et al.

The Genome Sequences of Arachis Duranensis and Arachis Ipaensis, the Diploid Ancestors of Cultivated Peanut.
Nature Genetics 48.4 (2016): 438-46.

13.Hu, Zheng, et al.

Reply to Artifacts in the Data of Hu Et Al.
Nature Genetics 48.1 (2016): 3-4.

12.Lamichhaney, Sangeet, et al.

Structural Genomic Changes Underlie Alternative Reproductive Strategies in the Ruff (Philomachus Pugnax).
Nature Genetics 48.1 (2016): 84-88.

11.Lin, Qiang, et al.

The Seahorse Genome and the Evolution of Its Specialized Morphology.
Nature 540.7633 (2016): 395-99.

10.Liu, Yu, et al.

Genomic Heterogeneity of Multiple Synchronous Lung Cancer.
Nature communications 7.1 (2016): 1-8.

9.Mondal, Mayukh, et al.

Genomic Analysis of Andamanese Provides Insights into Ancient Human Migration into Asia and Adaptation.
Nature Genetics 48.9 (2016): 1066-70.

8.Nygaard, Sanne, et al.

Reciprocal Genomic Evolution in the Ant–Fungus Agricultural Symbiosis.
Nature Communications 7.1 (2016): 1-9.

7.Wang, Jun, and Huijue Jia.

Metagenome-Wide Association Studies: Fine-Mining the Microbiome.
Nature Reviews Microbiology 14.8 (2016): 508-22.

6.Xiao, Liang, et al.

A Reference Gene Catalogue of the Pig Gut Microbiome.
Nature Microbiology 1.12 (2016): 16161.

5.Xie, Hailiang, et al.

Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome.
Cell systems 3.6 (2016): 572-84. e3.

4.Yin, Wei, et al.

Evolutionary Trajectories of Snake Genes and Genomes Revealed by Comparative Analyses of Five-Pacer Viper.
Nature Communications 7.1 (2016): 13107.

3.Zhao, Ling-Hao, et al.

Genomic and Oncogenic Preference of Hbv Integration in Hepatocellular Carcinoma.
Nature Communications 7.1 (2016): 12992.

2.Zhao, Zhikun, et al.

Evolution of Multiple Cell Clones over a 29-Year Period of a Cll Patient.
Nature communications 7.1 (2016): 1-10.

1.Zhou, Fusheng, et al.

Deep Sequencing of the Mhc Region in the Chinese Population Contributes to Studies of Complex Disease.
Nature genetics 48.7 (2016): 740-46.

2015

BGI had first or corresponding authorship(s) in 20 papers published in CNNS journals in 2015 (updated on July 30, 2020)

20.Ai, Huashui, et al.

Adaptation and Possible Ancient Interspecies Introgression in Pigs Identified by Whole-Genome Sequencing.
Nature Genetics 47.3 (2015): 217-25.

19.Bäckhed, Fredrik, et al.

Dynamics and Stabilization of the Human Gut Microbiome During the First Year of Life.
Cell Host & Microbe 17.5 (2015): 690-703.

18.Besenbacher, Søren, et al.

Novel Variation and De Novo Mutation Rates in Population-Wide De Novo Assembled Danish Trios.
Nature Communications 6.1 (2015): 5969.

17.Cai, Jing, et al.

The Genome Sequence of the Orchid Phalaenopsis Equestris.
Nature Genetics 47.1 (2015): 65-72.

16.Cai, Na, et al.

Sparse Whole-Genome Sequencing Identifies Two Loci for Major Depressive Disorder.
Nature 523.7562 (2015): 588-91.

15.Cao, Hongzhi, et al.

De Novo Assembly of a Haplotype-Resolved Human Genome.
Nature Biotechnology 33.6 (2015): 617-22.

14.Feng, Qiang, et al.

Gut Microbiome Development Along the Colorectal Adenoma–Carcinoma Sequence.
Nature Communications 6.1 (2015): 6528.

13.Hu, Zheng, et al.

Genome-Wide Profiling of Hpv Integration in Cervical Cancer Identifies Clustered Genomic Hot Spots and a Potential Microhomology-Mediated Integration Mechanism.
Nature genetics 47.2 (2015): 158.

12.Huang, Lv-Zhen, et al.

Whole-Exome Sequencing Implicates Ube3d in Age-Related Macular Degeneration in East Asian Populations.
Nature Communications 6.1 (2015): 6687.

11.Kapheim, Karen M, et al.

Genomic Signatures of Evolutionary Transitions from Solitary to Group Living.
Science 348.6239 (2015): 1139-43.

10.Li, Fuguang, et al.

Genome Sequence of Cultivated Upland Cotton (Gossypium Hirsutum Tm-1) Provides Insights into Genome Evolution.
Nature biotechnology 33.5 (2015): 524-30.

9.Li, Xueyan, et al.

Outbred Genome Sequencing and Crispr/Cas9 Gene Editing in Butterflies.
Nature Communications 6.1 (2015): 8212.

8.Lin, Senjie, et al.

The Symbiodinium Kawagutii Genome Illuminates Dinoflagellate Gene Expression and Coral Symbiosis.
Science 350.6261 (2015): 691-94.

7.Liu, Yan, et al.

Gekko Japonicus Genome Reveals Evolution of Adhesive Toe Pads and Tail Regeneration.
Nature communications 6.1 (2015): 1-11.

6.Wu, Kui, et al.

Frequent Alterations in Cytoskeleton Remodelling Genes in Primary and Metastatic Lung Adenocarcinomas.
Nature Communications 6.1 (2015): 10131.

5.Xiao, Liang, et al.

A Catalog of the Mouse Gut Metagenome.
Nature Biotechnology 33.10 (2015): 1103-08.

4.Zhang, Guojie.

Bird Sequencing Project Takes Off.
Nature 522.7554 (2015): 34-34.

3.Zhang, Xuan, et al.

The Oral and Gut Microbiomes Are Perturbed in Rheumatoid Arthritis and Partly Normalized after Treatment.
Nature medicine 21.8 (2015): 895-905.

2.Zhao, Ling, et al.

Lanosterol Reverses Protein Aggregation in Cataracts.
Nature 523.7562 (2015): 607-11.

1.Zhu, Xing-Quan, et al.

Genetic Blueprint of the Zoonotic Pathogen Toxocara Canis.
Nature Communications 6.1 (2015): 6145.

2014

BGI had first or corresponding authorship(s) in 36 papers published in CNNS journals in 2014 (updated on July 30, 2020)

36.Bell, J. T., et al.

Differential Methylation of the Trpa1 Promoter in Pain Sensitivity.
Nature Communications 5 (2014).

35.Cao, Yanan, et al.

Activating Hotspot L205r Mutation in Prkaca and Adrenal Cushing’s Syndrome.
Science 344.6186 (2014): 913-17.

34.Chen, S. L., et al.

Whole-Genome Sequence of a Flatfish Provides Insights into Zw Sex Chromosome Evolution and Adaptation to a Benthic Lifestyle.
Nature Genetics 46.3 (2014): 253-+.

33.Dai, Xiaogang, et al.

The Willow Genome and Divergent Evolution from Poplar after the Common Genome Duplication.
Cell Research 24.10 (2014): 1274-77.

32.Fang, Xiaodong, et al.

Genome-Wide Adaptive Complexes to Underground Stresses in Blind Mole Rats Spalax.
Nature Communications 5.1 (2014): 3966.

31.Fang, Xiaodong, et al.

Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes.
Cell Reports 8.5 (2014): 1354-64.

30.Genome of the Netherlands, Consortium.

Whole-Genome Sequence Variation, Population Structure and Demographic History of the Dutch Population.
Nat Genet 46.8 (2014): 818-25.

29.Huerta-Sanchez, E., et al.

Altitude Adaptation in Tibetans Caused by Introgression of Denisovan-Like DNA.
Nature 512.7513 (2014): 194-+.

28.Jarvis, E. D., et al.

Whole-Genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds.
Science 346.6215 (2014): 1320-31.

27.Jex, A. R., et al.

Genome and Transcriptome of the Porcine Whipworm Trichuris Suis.
Nature Genetics 46.7 (2014): 701-06.

26.Jiang, Y., et al.

The Sheep Genome Illuminates Biology of the Rumen and Lipid Metabolism.
Science 344.6188 (2014): 1168-73.

25.Klapoetke, N. C., et al.

Independent Optical Excitation of Distinct Neural Populations.
Nature Methods 11.3 (2014): 338-U33.

24.Li, F. G., et al.

Genome Sequence of the Cultivated Cotton Gossypium Arboreum.
Nature Genetics 46.6 (2014): 567-72.

23.Li, J., et al.

An Integrated Catalog of Reference Genes in the Human Gut Microbiome.
Nat Biotechnol 32.8 (2014): 834-41.

22.Li, Q., et al.

Caste-Specific Rna Editomes in the Leaf-Cutting Ant Acromyrmex Echinatior.
Nat Commun 5 (2014): 4943.

21.Liu, Meng-Jun, et al.

The Complex Jujube Genome Provides Insights into Fruit Tree Biology.
Nature communications 5.1 (2014): 1-12.

20.Liu, Shiping, et al.

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears.
Cell 157.4 (2014): 785-94.

19.Liu, S. Y., et al.

The Brassica Oleracea Genome Reveals the Asymmetrical Evolution of Polyploid Genomes.
Nature Communications 5 (2014).

18.Misof, B., et al.

Phylogenomics Resolves the Timing and Pattern of Insect Evolution.
Science 346.6210 (2014): 763-7.

17.Qi, Xinpeng, et al.

Identification of a Novel Salt Tolerance Gene in Wild Soybean by Whole-Genome Sequencing.
Nature Communications 5.1 (2014): 4340.

16.Sanggaard, K. W., et al.

Spider Genomes Provide Insight into Composition and Evolution of Venom and Silk.
Nature Communications 5 (2014).

15.Sheng, Yujun, et al.

Sequencing-Based Approach Identified Three New Susceptibility Loci for Psoriasis.
Nature Communications 5.1 (2014): 4331.

14.Song, Y. M., et al.

Identification of Genomic Alterations in Oesophageal Squamous Cell Cancer.
Nature 509.7498 (2014): 91-+.

13.Suzuki, Keiichiro, et al.

Targeted Gene Correction Minimally Impacts Whole-Genome Mutational Load in Human-Disease-Specific Induced Pluripotent Stem Cell Clones.
Cell stem cell 15.1 (2014): 31-36.

12.Tang, H. Y., et al.

A Large-Scale Screen for Coding Variants Predisposing to Psoriasis.
Nature Genetics 46.1 (2014): 45-+.

11.Terrapon, Nicolas, et al.

Molecular Traces of Alternative Social Organization in a Termite Genome.
Nature communications 5 (2014): 3636.

10.Wang, Xianhui, et al.

The Locust Genome Provides Insight into Swarm Formation and Long-Distance Flight.
Nature Communications 5.1 (2014): 2957.

9.Wu, Huiguang, et al.

Camelid Genomes Reveal Evolution and Adaptation to Desert Environments.
Nature Communications 5.1 (2014): 5188.

8.Yim, H. S., et al.

Minke Whale Genome and Aquatic Adaptation in Cetaceans.
Nature Genetics 46.1 (2014): 88-+.

7.You, Xinxin, et al.

Mudskipper Genomes Provide Insights into the Terrestrial Adaptation of Amphibious Fishes.
Nature Communications 5.1 (2014): 5594.

6.Young, N. D., et al.

The Opisthorchis Viverrini Genome Provides Insights into Life in the Bile Duct.
Nat Commun 5 (2014): 4378.

5.Yu, Chang, et al.

Discovery of Biclonal Origin and a Novel Oncogene Slc12a5 in Colon Cancer by Single-Cell Sequencing.
Cell Research 24.6 (2014): 701-12.

4.Yuan, Wei, et al.

An Integrated Epigenomic Analysis for Type 2 Diabetes Susceptibility Loci in Monozygotic Twins.
Nature Communications 5.1 (2014): 5719.

3.Yuan, Yongyi, et al.

De Novo Mutation in Atp6v1b2 Impairs Lysosome Acidification and Causes Dominant Deafness-Onychodystrophy Syndrome.
Cell research 24.11 (2014): 1370-73.

2.Zhang, G. J., et al.

Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation.
Science 346.6215 (2014): 1311-20.

1.Zhou, Qi, et al.

Complex Evolutionary Trajectories of Sex Chromosomes across Bird Taxa.
Science 346.6215 (2014).

2013

BGI had first or corresponding authorship(s) in 37 papers published in CNNS journals in 2013 (updated on July 30, 2020)

37.Blaser, M., et al.

The Microbiome Explored: Recent Insights and Future Challenges.
Nature Reviews Microbiology 11.3 (2013): 213-17.

36.Cao, Y. N., et al.

Whole Exome Sequencing of Insulinoma Reveals Recurrent T372r Mutations in Yy1.
Nature Communications 4 (2013).

35.Chen, Jinfeng, et al.

Whole-Genome Sequencing of Oryza Brachyantha Reveals Mechanisms Underlying Oryza Genome Evolution.
Nature Communications 4.1 (2013): 1-9.

34.Cho, Y. S., et al.

The Tiger Genome and Comparative Analysis with Lion and Snow Leopard Genomes.
Nature Communications 4 (2013).

33.De Keersmaecker, Kim, et al.

Exome Sequencing Identifies Mutation in Cnot3 and Ribosomal Genes Rpl5 and Rpl10 in T-Cell Acute Lymphoblastic Leukemia.
Nature Genetics 45.2 (2013): 186-90.

32.Dong, Yang, et al.

Sequencing and Automated Whole-Genome Optical Mapping of the Genome of a Domestic Goat (Capra Hircus).
Nature Biotechnology 31.2 (2013): 135-41.

31.Fan, Nana, et al.

Piglets Cloned from Induced Pluripotent Stem Cells.
Cell research 23.1 (2013): 162-66.

30.Fan, Y., et al.

Genome of the Chinese Tree Shrew.
Nature Communications 4 (2013).

29.Fu, J. J., et al.

Rna Sequencing Reveals the Complex Regulatory Network in the Maize Kernel.
Nature Communications 4 (2013).

28.Ge, R. L., et al.

Draft Genome Sequence of the Tibetan Antelope.
Nature Communications 4 (2013).

27.Guo, G. W., et al.

Whole-Genome and Whole-Exome Sequencing of Bladder Cancer Identifies Frequent Alterations in Genes Involved in Sister Chromatid Cohesion and Segregation.
Nature Genetics 45.12 (2013): 1459-U213.

26.Guo, S. G., et al.

The Draft Genome of Watermelon (Citrullus Lanatus) and Resequencing of 20 Diverse Accessions.
Nature Genetics 45.1 (2013): 51-U82.

25.He, N. J., et al.

Draft Genome Sequence of the Mulberry Tree Morus Notabilis.
Nature Communications 4 (2013).

24.Huang, Y. H., et al.

The Duck Genome and Transcriptome Provide Insight into an Avian Influenza Virus Reservoir Species.
Nature Genetics 45.7 (2013): 776-+.

23.Jia, J. Z., et al.

Aegilops Tauschii Draft Genome Sequence Reveals a Gene Repertoire for Wheat Adaptation.
Nature 496.7443 (2013): 91-95.

22.Le Chatelier, E., et al.

Richness of Human Gut Microbiome Correlates with Metabolic Markers.
Nature 500.7464 (2013): 541-+.

21.Lewis, N. E., et al.

Genomic Landscapes of Chinese Hamster Ovary Cell Lines as Revealed by the Cricetulus Griseus Draft Genome.
Nature Biotechnology 31.8 (2013): 759-+.

20.Li, H., et al.

Genome-Wide Association Study Dissects the Genetic Architecture of Oil Biosynthesis in Maize Kernels.
Nature Genetics 45.1 (2013): 43-U72.

19.Ling, H. Q., et al.

Draft Genome of the Wheat a-Genome Progenitor Triticum Urartu.
Nature 496.7443 (2013): 87-90.

18.Ma, T., et al.

Genomic Insights into Salt Adaptation in a Desert Poplar.
Nature Communications 4 (2013).

17.Mace, E. S., et al.

Whole-Genome Sequencing Reveals Untapped Genetic Potential in Africa's Indigenous Cereal Crop Sorghum.
Nat Commun 4 (2013): 2320.

16.Orlando, L., et al.

Recalibrating Equus Evolution Using the Genome Sequence of an Early Middle Pleistocene Horse.
Nature 499.7456 (2013): 74-+.

15.Piskol, R., et al.

Lack of Evidence for Existence of Noncanonical Rna Editing.
Nature Biotechnology 31.1 (2013): 19-20.

14.Qi, J. J., et al.

A Genomic Variation Map Provides Insights into the Genetic Basis of Cucumber Domestication and Diversity.
Nature Genetics 45.12 (2013): 1510-U149.

13.Ren, Shancheng, et al.

Rna-Seq Analysis of Prostate Cancer in the Chinese Population Identifies Recurrent Gene Fusions, Cancer-Associated Long Noncoding Rnas and Aberrant Alternative Splicings.
Cell Research 23.5 (2013): 732-32.

12.Seim, I., et al.

Genome Analysis Reveals Insights into Physiology and Longevity of the Brandt's Bat Myotis Brandtii.
Nature Communications 4 (2013).

11.Shapiro, M. D., et al.

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon.
Science 339.6123 (2013): 1063-67.

10.Varshney, R. K., et al.

Draft Genome Sequence of Chickpea (Cicer Arietinum) Provides a Resource for Trait Improvement.
Nature Biotechnology 31.3 (2013): 240-46.

9.Wan, Q. H., et al.

Genome Analysis and Signature Discovery for Diving and Sensory Properties of the Endangered Chinese Alligator.
Cell Research 23.9 (2013): 1091-105.

8.Wang, Z., et al.

The Draft Genomes of Soft-Shell Turtle and Green Sea Turtle Yield Insights into the Development and Evolution of the Turtle-Specific Body Plan.
Nature Genetics 45.6 (2013): 701-+.

7.You, M. S., et al.

A Heterozygous Moth Genome Provides Insights into Herbivory and Detoxification.
Nature Genetics 45.2 (2013): 220-25.

6.Zhan, X. J., et al.

Peregrine and Saker Falcon Genome Sequences Provide Insights into Evolution of a Predatory Lifestyle.
Nature Genetics 45.5 (2013): 563-U142.

5.Zhang, Guojie, et al.

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity.
Science 339.6118 (2013): 456-60.

4.Zhang, H. T., et al.

Genome Sequencing of 161 Mycobacterium Tuberculosis Isolates from China Identifies Genes and Intergenic Regions Associated with Drug Resistance.
Nature Genetics 45.10 (2013): 1255-U217.

3.Zhao, Shancen, et al.

Whole-Genome Sequencing of Giant Pandas Provides Insights into Demographic History and Local Adaptation.
Nature Genetics 45.1 (2013): 67-71.

2.Zheng, W. M., et al.

High Genome Heterozygosity and Endemic Genetic Recombination in the Wheat Stripe Rust Fungus.
Nature Communications 4 (2013).

1.Zhou, X. M., et al.

Baiji Genomes Reveal Low Genetic Variability and New Insights into Secondary Aquatic Adaptations.
Nature Communications 4 (2013).

2012

BGI had first or corresponding authorship(s) in 19 papers published in CNNS journals in 2012 (updated on July 30, 2020)

19.Chia, J. M., et al

Maize Hapmap2 Identifies Extant Variation from a Genome in Flux.
Nature Genetics 44.7 (2012): 803-U238.

18.Chiang, Pei-Wen, et al

Exome Sequencing Identifies Nmnat1 Mutations as a Cause of Leber Congenital Amaurosis.
Nature genetics 44.9 (2012): 972-74.

17.Goodman, Laurie, Rebecca Lawrence, and Kevin Ashley

Cite Links to Data in Reference Lists.
Nature 492.7429 (2012): 356-56.

16.Guo, G., et al

Frequent Mutations of Genes Encoding Ubiquitin-Mediated Proteolysis Pathway Components in Clear Cell Renal Cell Carcinoma.
Nat Genet 44.1 (2012): 17-9.

15.Hou, Y., et al

Single-Cell Exome Sequencing and Monoclonal Evolution of a Jak2-Negative Myeloproliferative Neoplasm.
Cell 148.5 (2012): 873-85.

14.Hufford, M. B., et al

Comparative Population Genomics of Maize Domestication and Improvement.
Nature Genetics 44.7 (2012): 808-U118.

13.Li, Mingzhou, et al

An Atlas of DNA Methylomes in Porcine Adipose and Muscle Tissues.
Nature Communications 3.1 (2012): 850.

12.Michaelson, J. J., et al

Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation.
Cell 151.7 (2012): 1431-42.

11.Peng, Zhiyu, et al

Comprehensive Analysis of Rna-Seq Data Reveals Extensive Rna Editing in a Human Transcriptome.
Nature biotechnology 30.3 (2012): 253-60.

10.Qin, J. J., et al

A Metagenome-Wide Association Study of Gut Microbiota in Type 2 Diabetes.
Nature 490.7418 (2012): 55-60.

9.Qiu, Q., et al

The Yak Genome and Adaptation to Life at High Altitude.
Nature Genetics 44.8 (2012): 946-+.

8.Sung, W. K., et al

Genome-Wide Survey of Recurrent Hbv Integration in Hepatocellular Carcinoma.
Nature Genetics 44.7 (2012): 765-U188.

7.Xu, X., et al

Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney Tumor.
Cell 148.5 (2012): 886-95.

6.Xu, X., et al

Resequencing 50 Accessions of Cultivated and Wild Rice Yields Markers for Identifying Agronomically Important Genes.
Nature Biotechnology 30.1 (2012): 105-U57.

5.Young, Neil D, et al

Whole-Genome Sequence of Schistosoma Haematobium.
Nature genetics 44.2 (2012): 221.

4.Zhang, Guofan, et al

The Oyster Genome Reveals Stress Adaptation and Complexity of Shell Formation.
Nature 490.7418 (2012): 49-54.

3.Zhang, G. Y., et al

Genome Sequence of Foxtail Millet (Setaria Italica) Provides Insights into Grass Evolution and Biofuel Potential.
Nature Biotechnology 30.6 (2012): 549-+.

2.Zhang, Qixiang, et al

The Genome of Prunus Mume.
Nature Communications 3.1 (2012): 1318.

1.Zhang, Sheng-Quan, et al

Exome Sequencing Identifies Mvk Mutations in Disseminated Superficial Actinic Porokeratosis.
Nature genetics 44.10 (2012): 1156-60.

2011

BGI had first or corresponding authorship(s) in 10 papers published in CNNS journals in 2011 (updated on July 30, 2020)

10.Gui, Y. T., et al.

Frequent Mutations of Chromatin Remodeling Genes in Transitional Cell Carcinoma of the Bladder.
Nature Genetics 43.9 (2011): 875-U84.

9.Jex, A. R., et al.

Ascaris Suum Draft Genome.
Nature 479.7374 (2011): 529-U257.

8.Kim, E. B., et al.

Genome Sequencing Reveals Insights into Physiology and Longevity of the Naked Mole Rat.
Nature 479.7372 (2011): 223-27.

7.Li, Y. R., et al.

Structural Variation in Two Human Genomes Mapped at Single-Nucleotide Resolution by Whole Genome De Novo Assembly.
Nature Biotechnology 29.8 (2011): 723-U130.

6.Rasmussen, M., et al.

An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia.
Science 334.6052 (2011): 94-98.

5.Rohde, H., et al.

Open-Source Genomic Analysis of Shiga-Toxin-Producing E. Coli O104:H4.
New England Journal of Medicine 365.8 (2011): 718-24.

4.Trusheim, M. R., et al.

Quantifying Factors for the Success of Stratified Medicine.
Nature Reviews Drug Discovery 10.11 (2011): 817-33.

3.Wang, X. W., et al.

The Genome of the Mesopolyploid Crop Species Brassica Rapa.
Nature Genetics 43.10 (2011): 1035-U157.

2.Xu, X., et al.

The Genomic Sequence of the Chinese Hamster Ovary (Cho)-K1 Cell Line.
Nature Biotechnology 29.8 (2011): 735-U131.

1.Yan, G. M., et al.

Genome Sequencing and Comparison of Two Nonhuman Primate Animal Models, the Cynomolgus and Chinese Rhesus Macaques.
Nature Biotechnology 29.11 (2011): 1019-U89.

2010

BGI had first or corresponding authorship(s) in 10 papers published in CNNS journals in 2010 (updated on July 30, 2020)

10.Bonasio, R., et al.

Genomic Comparison of the Ants Camponotus Floridanus and Harpegnathos Saltator.
Science 329.5995 (2010): 1068-71.

9.Lai, J. S., et al.

Genome-Wide Patterns of Genetic Variation among Elite Maize Inbred Lines.
Nature Genetics 42.11 (2010): 1027-U158.

8.Lam, H. M., et al.

Resequencing of 31 Wild and Cultivated Soybean Genomes Identifies Patterns of Genetic Diversity and Selection.
Nature Genetics 42.12 (2010): 1053-U41.

7.Li, R., et al.

The Sequence and De Novo Assembly of the Giant Panda Genome.
Nature 463.7279 (2010): 311-7.

6.Li, R. Q., et al.

Building the Sequence Map of the Human Pan-Genome.
Nature Biotechnology 28.1 (2010): 57-U83.

5.Li, Y. R., et al.

Resequencing of 200 Human Exomes Identifies an Excess of Low-Frequency Non-Synonymous Coding Variants.
Nature Genetics 42.11 (2010): 969-U82.

4.Qin, J. J., et al.

A Human Gut Microbial Gene Catalogue Established by Metagenomic Sequencing.
Nature 464.7285 (2010): 59-U70.

3.Rasmussen, M., et al.

Ancient Human Genome Sequence of an Extinct Palaeo-Eskimo.
Nature 463.7282 (2010): 757-62.

2.Xiang, H., et al.

Single Base-Resolution Methylome of the Silkworm Reveals a Sparse Epigenomic Map.
Nature Biotechnology 28.5 (2010): 516-U181.

1.Yi, X., et al.

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude.
Science 329.5987 (2010): 75-78.

2009

BGI had first or corresponding authorship(s) in 3 papers published in CNNS journals in 2009 (updated on July 30, 2020)

3.Huang, S. W., et al.

The Genome of the Cucumber, Cucumis Sativus L.
Nature Genetics 41.12 (2009): 1275-U29.

2.Li, Y. R., and J. Wang.

Faster Human Genome Sequencing.
Nature Biotechnology 27.9 (2009): 820-21.

1.Xia, Q. Y., et al

Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx).
Science 326.5951 (2009): 433-36.

2008

BGI had first or corresponding authorship(s) in 2 papers published in CNNS journals in 2008 (updated on July 30, 2020)

2.Chen, X., et al.

Characterization of Micrornas in Serum: A Novel Class of Biomarkers for Diagnosis of Cancer and Other Diseases.
Cell Research 18.10 (2008): 997-1006.

1.Wang, J., et al.

The Diploid Genome Sequence of an Asian Individual.
Nature 456.7218 (2008): 60-U1.

2007

BGI had first or corresponding authorship(s) in 1 paper published in CNNS journals in 2007 (updated on July 30, 2020)

1.Sun, T., et al.

A Six-Nucleotide Insertion-Deletion Polymorphism in the Casp8 Promoter Is Associated with Susceptibility to Multiple Cancers.
Nature Genetics 39.5 (2007): 605-13.

2006

BGI had first or corresponding authorship(s) in 2 papers published in CNNS journals in 2006 (updated on July 30, 2020)

2.Li, L., et al.

Genome-Wide Transcription Analyses in Rice Using Tiling Microarrays.
Nature Genetics 38.1 (2006): 124-29.

1.Muzny, Donna M, et al.

The DNA Sequence, Annotation and Analysis of Human Chromosome 3.
Nature 440.7088 (2006): 1194-98.

2005

BGI had first or corresponding authorship(s) in 0 paper published in CNNS journals in 2005 (updated on July 30, 2020)

2004

BGI had first or corresponding authorship(s) in 3 papers published in CNNS journals in 2004 (updated on July 30, 2020)

3.Wang, J., et al.

Mouse Transcriptome - Neural Evolution of 'Non-Coding' Complementary Dnas. Nature 431.7010 (2004).

2.Wong, G. K., et al.

A Genetic Variation Map for Chicken with 2.8 Million Single-Nucleotide Polymorphisms. Nature 432.7018 (2004): 717-22.

1.Xia, Q. Y., et al.

A Draft Sequence for the Genome of the Domesticated Silkworm (Bombyx Mori). Science 306.5703 (2004): 1937-40.

2003

BGI had first or corresponding authorship(s) in 1 paper published in CNNS journals in 2003 (updated on July 30, 2020)

1.Wang, J., et al.

Vertebrate Gene Predictions and the Problem of Large Genes. Nature Reviews Genetics 4.9 (2003): 741-49.

2002

BGI had first or corresponding authorship(s) in 1 paper published in CNNS journals in 2002 (updated on July 30, 2020)

1.Yu, Jun, et al.

A Draft Sequence of the Rice Genome (Oryza Sativa L. Ssp. Indica). science 296.5565 (2002): 79-92.

2001

BGI had first or corresponding authorship(s) in 0 paper published in CNNS journals in 2001 (updated on July 30, 2020)

2000

BGI had first or corresponding authorship(s) in 0 paper published in CNNS journals in 2000 (updated on July 30, 2020)

1999

BGI had first or corresponding authorship(s) in 0 paper published in CNNS journals in 2020 (updated on July 30, 2020)